Researcher, M.Sc. (Tech.)
My research interests are: data integration, translational modelling, multi-way analysis, Bayesian methods, metabolomics. I have a position in the FICS graduate school. I'm a board member (2009-2010, 2010-2011) in the Finnish Bioinformatics Society.
I am originally a physicist and I graduated in 2006 at the Department of Engineering Physics and Mathematics of HUT and moved to machine learning and bioinformatics.
Dynamical scaling exponents for polymer translocation through a nanopore, K. Luo, S. Ollila, I. Huopaniemi, T. Ala-Nissila, P. Pomorski, M. Karttunen, S.-C. Ying and A. Bhattacharya, Phys. Rev. E 78, 050901 (2008),
Polymer translocation through a nanopore under a pulling force, I. Huopaniemi, K. Luo, T. Ala-Nissila, and S.C. Ying, Phys. Rev. E 75, 061912 (2007).
Langevin dynamics simulations of polymer translocation through nanopores, I. Huopaniemi, K. Luo, T. Ala-Nissila, and S.-C. Ying, J. Chem. Phys. 125, 124901 (2006)
Polymer translocation through a nanopore under an applied external field, K. Luo, I. Huopaniemi, T. Ala-Nissila and S.-C. Ying, J. Chem. Phys. 124, 114704 (2006).
Dynamics and kinetic roughening of interfaces in two-dimensional forced wetting, T. Laurila, C. Tong, I. Huopaniemi, S. Majaniemi, and T. Ala-Nissila, Eur. Phys. J. B 46, 553-561 (2005).
Leo Lahti, Olli-Pekka Huovilainen, Tommi Suvitaival, Ilkka Huopaniemi and Abhishek Tripathi, Probabilistic Tools for Dependency Modelling, ICML/MLOSS 2010
MLSB 2009, poster presentation, 2-way analysis of high-dimensional metabolomics datasets
ISMB/ECCB 2009, poster presentation, 2-way analysis of high-dimensional metabolomics datasets
Brew 2008, Oral+paper presentation, Exploring cancer-related dependencies between several tissues
Bioinformatics 2007, Poster presentation, Exploring cancer-related dependencies between several tissues
Physics days 2006, poster presentation, Langevin Dynamics Simulations of Polymer Translocation through Nanopores
Physics days 2005, poster presentation, Dynamics of Interfaces and Kinetic Roughening in Forced Imbibition
Course assistant at
T-61.5050 High-Throughput Bioinformatics (2011)
T-61.5050 High-Throughput Bioinformatics (2010)
T-61.6070 Special course in bioinformatics I: Modeling of proteomics data (2008)
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