Initial parameters:

Matrix A:
		State 1		State 2
State 1:	0.600000	0.400000
State 2:	0.500000	0.500000

Matrix E:
		A		C		G		T
State 1:	0.300000	0.200000	0.200000	0.300000
State 2:	0.200000	0.300000	0.300000	0.200000


Parameter after training stage:

Matrix A:
		State 1		State 2
State 1:	0.620211	0.379789
State 2:	0.519492	0.480508

Matrix E:
		A		C		G		T
State 1:	0.348647	0.152400	0.155769	0.343184
State 2:	0.241229	0.258088	0.263453	0.237230

Sequence:	ACAGAAGAACATTATAGCGTTACAATAATTATATCTGATGTATTTTTGCCCATCCGCCCCGGGGTNCGGCGAGCCTGTGTTCACCAAGCCATGCCACGGTTCCCGCGACCTAGCCGCACATATATCATTTCTACATAAGCTGGGTTTAAATTCAAATATT
Opt. path:	000000000000000001110000000000000000000000000000111100111111111110011111011100000000110011100111011100111111011001111100000000000000000000011011100000000000000
