Initial parameters:

Matrix A:
		State 1		State 2
State 1:	0.600000	0.400000
State 2:	0.500000	0.500000

Matrix E:
		A		C		G		T
State 1:	0.300000	0.200000	0.200000	0.300000
State 2:	0.200000	0.300000	0.300000	0.200000


Parameter after training stage:

Matrix A:
		State 1		State 2
State 1:	0.620211	0.379789
State 2:	0.519492	0.480508

Matrix E:
		A		C		G		T
State 1:	0.348647	0.152400	0.155769	0.343184
State 2:	0.241229	0.258088	0.263453	0.237230

Sequence:	TTATACTTAGTTGCATAGTAGAACATTATTATATTGATAACAGACACGTAGCAAGGCGTTCAGGGGGCTTTCGGTCCGGAAGCAGCGTCGGGGCGGGAATTCGAACCCTGAATCCTAAGATTAAGTCTACCACAATTTTGAAGTGACGATGAATGTGTCC
Opt. path:	0000000000000110000000000000000000000000000000011001100111100001111110001110111100110111011111111100001100111000001100000000000000110000000000000001100000000001
